Package: parasiteR 1.1.1

Juan Manuel Cabrera

parasiteR: A Theorical-Practical Approach to Parasitological Data Analysis

Standardizes and streamlines the processing of parasitological data by integrating descriptive analyses of parasite count distributions, automated calculation of parasitological indices and their dispersion measures, and intuitive visualizations for representing these metrics (Bush et al. 1997 <doi:10.2307/3284227>, Reiczigel et al. 2019 <doi:10.1016/j.pt.2019.01.003>).

Authors:Exequiel Oscar Furlan [aut], Juan Manuel Cabrera [aut, cre, cph], Elisa Helman [aut]

parasiteR_1.1.1.tar.gz
parasiteR_1.1.1.zip(r-4.7-any)parasiteR_1.1.1.zip(r-4.6-any)parasiteR_1.1.1.zip(r-4.5-any)
parasiteR_1.1.1.tgz(r-4.6-any)parasiteR_1.1.1.tgz(r-4.5-any)
parasiteR_1.1.1.tar.gz(r-4.7-any)parasiteR_1.1.1.tar.gz(r-4.6-any)
parasiteR_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
parasiteR/json (API)

# Install 'parasiteR' in R:

install.packages('parasiteR', repos = c('https://dvelop-r.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dvelop-r/parasiter/issues

Datasets:

para_data - Simulated parasite abundance data for multiple species across hosts and sites

On CRAN:

3.81 score 223 downloads 10 exports 49 dependencies

Last updated from:c47b9e6969. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	143
source / vignettes	OK	185
linux-release	OK	138
macos-release	OK	186
macos-oldrel	OK	171
windows-devel	OK	76
windows-release	OK	85
windows-oldrel	OK	74
wasm-release	OK	110

Exports:%>%para_abundance_CI para_aggregation_CI para_descriptors para_explo_abund para_explo_prev para_intensity_CI para_plot_CI para_prevalence_CI para_read_data

Dependencies:bbmle bdsmatrix binom bit bit64 BlakerCI boot cli clipr cpp11 crayon dplyr farver generics ggplot2 glue gtable hms isoband labeling lattice lifecycle magrittr MASS Matrix mvtnorm numDeriv pillar pkgconfig prettyunits progress purrr R6 RColorBrewer readr rlang S7 scales stringi stringr tibble tidyr tidyselect tzdb utf8 vctrs viridisLite vroom withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Mean or median abundance estimation and confidence intervals	para_abundance_CI
Aggregation indices and confidence intervals for parasite distributions	para_aggregation_CI
Simulated parasite abundance data for multiple species across hosts and sites	para_data
Parasitological descriptors and summary statistics	para_descriptors
Exploratory plots of parasite abundance distributions	para_explo_abund
Exploratory plots of parasite prevalence	para_explo_prev
Mean or median intensity estimation and confidence intervals	para_intensity_CI
Visualization of parasitological descriptor with confidence intervals	para_plot_CI
Parasite prevalence estimation and confidence intervals	para_prevalence_CI
Read parasite data	para_read_data